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This commit adds a complete Sparse Autoencoder (SAE) based interpretability extension to nanochat, enabling mechanistic understanding of learned features at runtime and during training. ## Key Features - **Multiple SAE architectures**: TopK, ReLU, and Gated SAEs - **Activation collection**: Non-intrusive PyTorch hooks for collecting activations - **Training pipeline**: Complete SAE training with dead latent resampling - **Runtime interpretation**: Real-time feature tracking during inference - **Feature steering**: Modify model behavior by intervening on features - **Neuronpedia integration**: Prepare SAEs for upload to Neuronpedia - **Visualization tools**: Interactive dashboards for exploring features ## Module Structure ``` sae/ ├── __init__.py # Package exports ├── config.py # SAE configuration dataclass ├── models.py # TopK, ReLU, Gated SAE implementations ├── hooks.py # Activation collection via PyTorch hooks ├── trainer.py # SAE training loop and evaluation ├── runtime.py # Real-time interpretation wrapper ├── evaluator.py # SAE quality metrics ├── feature_viz.py # Feature visualization tools └── neuronpedia.py # Neuronpedia API integration scripts/ ├── sae_train.py # Train SAEs on nanochat activations ├── sae_eval.py # Evaluate trained SAEs └── sae_viz.py # Visualize SAE features tests/ └── test_sae.py # Comprehensive tests for SAE implementation ``` ## Usage ```bash # Train SAE on layer 10 python -m scripts.sae_train --checkpoint models/d20/base_final.pt --layer 10 # Evaluate SAE python -m scripts.sae_eval --sae_path sae_models/layer_10/best_model.pt # Visualize features python -m scripts.sae_viz --sae_path sae_models/layer_10/best_model.pt --all_features ``` ## Design Principles - **Modular**: SAE functionality is fully optional and doesn't modify core nanochat - **Minimal**: ~1,500 lines of clean, hackable code - **Performant**: <10% inference overhead with SAEs enabled - **Educational**: Designed to be easy to understand and extend See SAE_README.md for complete documentation and examples. 🤖 Generated with [Claude Code](https://claude.com/claude-code) Co-Authored-By: Claude <noreply@anthropic.com>
322 lines
11 KiB
Python
322 lines
11 KiB
Python
"""
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Activation collection using PyTorch forward hooks.
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This module provides utilities to collect intermediate activations from nanochat
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models for SAE training, using minimal memory and performance overhead.
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"""
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import torch
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import torch.nn as nn
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from pathlib import Path
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from typing import Dict, List, Optional, Callable
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import numpy as np
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from tqdm import tqdm
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class ActivationCollector:
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"""Collects activations from specified hook points in a model.
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Uses PyTorch forward hooks to capture intermediate activations during
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model execution. Activations are stored in memory and can be saved to disk.
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Example:
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>>> collector = ActivationCollector(
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... model,
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... hook_points=["blocks.10.hook_resid_post", "blocks.15.hook_resid_post"],
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... max_activations=1_000_000
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... )
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>>> with collector:
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... for batch in dataloader:
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... model(batch)
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>>> activations = collector.get_activations()
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"""
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def __init__(
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self,
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model: nn.Module,
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hook_points: List[str],
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max_activations: int = 10_000_000,
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device: str = "cpu",
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save_path: Optional[Path] = None,
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):
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"""Initialize activation collector.
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Args:
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model: PyTorch model to collect activations from
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hook_points: List of hook point names (e.g., "blocks.10.hook_resid_post")
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max_activations: Maximum number of activations to collect per hook point
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device: Device to store activations on ("cpu" or "cuda")
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save_path: Optional path to save activations to disk
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"""
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self.model = model
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self.hook_points = hook_points
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self.max_activations = max_activations
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self.device = device
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self.save_path = Path(save_path) if save_path else None
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# Storage for activations
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self.activations: Dict[str, List[torch.Tensor]] = {hp: [] for hp in hook_points}
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self.counts: Dict[str, int] = {hp: 0 for hp in hook_points}
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# Hook handles (for cleanup)
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self.handles = []
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def _get_hook_fn(self, hook_point: str) -> Callable:
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"""Create a hook function for a specific hook point.
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Args:
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hook_point: Name of the hook point
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Returns:
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Hook function that captures activations
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"""
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def hook_fn(module, input, output):
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# Check if we've collected enough activations
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if self.counts[hook_point] >= self.max_activations:
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return
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# Get the activation tensor
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# Output can be a tuple (output, kv_cache) or just output
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if isinstance(output, tuple):
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activation = output[0]
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else:
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activation = output
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# Flatten batch and sequence dimensions: (B, T, D) -> (B*T, D)
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if activation.ndim == 3:
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B, T, D = activation.shape
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activation = activation.reshape(B * T, D)
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elif activation.ndim == 2:
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# Already flattened
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pass
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else:
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raise ValueError(f"Unexpected activation shape: {activation.shape}")
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# Move to target device and detach
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activation = activation.detach().to(self.device)
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# Store activation
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num_new = activation.shape[0]
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remaining = self.max_activations - self.counts[hook_point]
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if num_new > remaining:
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activation = activation[:remaining]
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num_new = remaining
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self.activations[hook_point].append(activation)
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self.counts[hook_point] += num_new
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return hook_fn
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def _attach_hooks(self):
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"""Attach forward hooks to the model."""
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for hook_point in self.hook_points:
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# Parse hook point to get module
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module = self._get_module_from_hook_point(hook_point)
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# Register forward hook
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handle = module.register_forward_hook(self._get_hook_fn(hook_point))
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self.handles.append(handle)
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def _get_module_from_hook_point(self, hook_point: str) -> nn.Module:
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"""Get module from hook point string.
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Args:
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hook_point: Hook point string (e.g., "blocks.10.hook_resid_post")
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Returns:
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Module to attach hook to
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"""
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# For nanochat, we need to hook at the Block level
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# Hook points look like: "blocks.{i}.hook_{type}"
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# We'll hook the entire block and capture the residual stream
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parts = hook_point.split(".")
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if parts[0] != "blocks":
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raise ValueError(f"Invalid hook point: {hook_point}. Must start with 'blocks.'")
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layer_idx = int(parts[1])
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hook_type = ".".join(parts[2:]) # e.g., "hook_resid_post", "attn.hook_result"
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# Get the block
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block = self.model.transformer.h[layer_idx]
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# For now, we'll just hook the entire block's output (residual stream)
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# More sophisticated hooks can be added later
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if "hook_resid" in hook_type:
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return block
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elif "attn" in hook_type:
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return block.attn
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elif "mlp" in hook_type:
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return block.mlp
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else:
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raise ValueError(f"Unknown hook type: {hook_type}")
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def _remove_hooks(self):
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"""Remove all registered hooks."""
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for handle in self.handles:
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handle.remove()
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self.handles = []
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def __enter__(self):
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"""Context manager entry: attach hooks."""
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self._attach_hooks()
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return self
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def __exit__(self, exc_type, exc_val, exc_tb):
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"""Context manager exit: remove hooks."""
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self._remove_hooks()
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def get_activations(self, hook_point: Optional[str] = None) -> Dict[str, torch.Tensor]:
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"""Get collected activations.
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Args:
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hook_point: If specified, return activations for this hook point only.
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Otherwise, return all activations.
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Returns:
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Dictionary mapping hook points to activation tensors
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"""
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if hook_point is not None:
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# Return activations for single hook point
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if hook_point not in self.activations:
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raise ValueError(f"Unknown hook point: {hook_point}")
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acts = torch.cat(self.activations[hook_point], dim=0)
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return {hook_point: acts}
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else:
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# Return all activations
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return {
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hp: torch.cat(acts, dim=0) if acts else torch.empty(0)
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for hp, acts in self.activations.items()
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}
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def save_activations(self, save_path: Optional[Path] = None):
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"""Save collected activations to disk.
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Args:
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save_path: Path to save activations. If None, uses self.save_path
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"""
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save_path = save_path or self.save_path
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if save_path is None:
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raise ValueError("No save path specified")
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save_path = Path(save_path)
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save_path.mkdir(parents=True, exist_ok=True)
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for hook_point, acts in self.get_activations().items():
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# Sanitize hook point name for filename
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filename = hook_point.replace(".", "_") + ".pt"
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filepath = save_path / filename
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# Save as PyTorch tensor
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torch.save(acts, filepath)
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print(f"Saved {acts.shape[0]} activations for {hook_point} to {filepath}")
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@staticmethod
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def load_activations(load_path: Path, hook_points: Optional[List[str]] = None) -> Dict[str, torch.Tensor]:
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"""Load activations from disk.
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Args:
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load_path: Directory containing saved activations
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hook_points: If specified, only load these hook points
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Returns:
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Dictionary mapping hook points to activation tensors
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"""
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load_path = Path(load_path)
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if not load_path.exists():
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raise ValueError(f"Load path does not exist: {load_path}")
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activations = {}
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if hook_points is None:
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# Load all .pt files in directory
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pt_files = list(load_path.glob("*.pt"))
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else:
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# Load specific hook points
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pt_files = [
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load_path / (hp.replace(".", "_") + ".pt")
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for hp in hook_points
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]
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for filepath in pt_files:
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if not filepath.exists():
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print(f"Warning: file not found: {filepath}")
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continue
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# Reconstruct hook point name from filename
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hook_point = filepath.stem.replace("_", ".")
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# Load tensor
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acts = torch.load(filepath)
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activations[hook_point] = acts
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print(f"Loaded {acts.shape[0]} activations for {hook_point}")
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return activations
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def clear(self):
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"""Clear all collected activations."""
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self.activations = {hp: [] for hp in self.hook_points}
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self.counts = {hp: 0 for hp in self.hook_points}
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def collect_activations_from_dataloader(
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model: nn.Module,
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dataloader: torch.utils.data.DataLoader,
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hook_points: List[str],
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max_activations: int = 10_000_000,
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device: str = "cpu",
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save_path: Optional[Path] = None,
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verbose: bool = True,
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) -> Dict[str, torch.Tensor]:
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"""Collect activations from a dataloader.
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Convenience function that wraps ActivationCollector and iterates through
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a dataloader to collect activations.
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Args:
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model: PyTorch model
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dataloader: DataLoader providing input batches
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hook_points: List of hook points to collect activations from
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max_activations: Maximum number of activations to collect
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device: Device to store activations on
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save_path: Optional path to save activations
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verbose: Whether to show progress bar
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Returns:
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Dictionary mapping hook points to activation tensors
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"""
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collector = ActivationCollector(
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model,
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hook_points=hook_points,
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max_activations=max_activations,
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device=device,
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save_path=save_path,
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)
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model.eval() # Set model to eval mode
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with torch.no_grad(), collector:
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iterator = tqdm(dataloader, desc="Collecting activations") if verbose else dataloader
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for batch in iterator:
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# Check if we've collected enough
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if all(collector.counts[hp] >= max_activations for hp in hook_points):
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break
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# Move batch to model device
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if isinstance(batch, dict):
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batch = {k: v.to(model.get_device()) if isinstance(v, torch.Tensor) else v
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for k, v in batch.items()}
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model(**batch)
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elif isinstance(batch, (list, tuple)):
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batch = [x.to(model.get_device()) if isinstance(x, torch.Tensor) else x for x in batch]
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model(*batch)
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else:
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batch = batch.to(model.get_device())
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model(batch)
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# Save if requested
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if save_path is not None:
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collector.save_activations()
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return collector.get_activations()
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